Detailed information of SNP:
|
SNP ID:
sf1223900622(Gbrowse)
Chromosome: chr12 Position: 23900622 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 74.98% | 25.02% |
| All Indica | 798 | 69.30% | 30.70% |
| All Japonica | 494 | 93.72% | 6.28% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 76.80% | 23.20% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223900622 | G->T | LOC_Os12g38920(LOC_Os12g38920.2) | INTRON |
| sf1223900622 | G->T | LOC_Os12g38920(LOC_Os12g38920.1) | INTRON |