Detailed information of SNP:
|
SNP ID:
sf1223908960(Gbrowse)
Chromosome: chr12 Position: 23908960 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1298 | 93.45% | 6.55% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 376 | 78.72% | 21.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 239 | 70.29% | 29.71% |
| Tropical Japonica | 80 | 97.50% | 2.50% |
| Japonica Intermediate | 57 | 87.72% | 12.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223908960 | A->G | INTERGENIC | None |