Detailed information of SNP:
|
SNP ID:
sf1223941124(Gbrowse)
Chromosome: chr12 Position: 23941124 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 78.88% | 21.12% |
| All Indica | 796 | 68.09% | 31.91% |
| All Japonica | 479 | 92.28% | 7.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 55.08% | 44.92% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 325 | 91.38% | 8.62% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 61 | 90.16% | 9.84% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223941124 | T->C | INTERGENIC | None |