Detailed information of SNP:
|
SNP ID:
sf1223958657(Gbrowse)
Chromosome: chr12 Position: 23958657 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 59.55% | 40.45% |
| All Indica | 792 | 94.95% | 5.05% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 208 | 93.27% | 6.73% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223958657 | T->C | INTERGENIC | None |