Detailed information of SNP:
|
SNP ID:
sf1223975492(Gbrowse)
Chromosome: chr12 Position: 23975492 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 98.81% | 1.19% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 421 | 96.20% | 3.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 288 | 96.88% | 3.12% |
| Tropical Japonica | 75 | 96.00% | 4.00% |
| Japonica Intermediate | 58 | 93.10% | 6.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223975492 | G->A | LOC_Os12g39030(LOC_Os12g39030.1) | INTRON |