Detailed information of SNP:
SNP ID:
sf1223977151(Gbrowse)
Chromosome: chr12 Position: 23977151 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1417 | 96.68% | 3.32% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 495 | 90.91% | 9.09% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 334 | 89.22% | 10.78% |
Tropical Japonica | 94 | 96.81% | 3.19% |
Japonica Intermediate | 67 | 91.04% | 8.96% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1223977151 | T->C | INTERGENIC | None |