Detailed information of SNP:
|
SNP ID:
sf1223986929(Gbrowse)
Chromosome: chr12 Position: 23986929 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.01% | 44.99% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223986929 | T->G | INTERGENIC | None |