Detailed information of SNP:
|
SNP ID:
sf1223988158(Gbrowse)
Chromosome: chr12 Position: 23988158 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 85.81% | 14.19% |
| All Indica | 796 | 75.63% | 24.37% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 72.46% | 27.54% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 60.77% | 39.23% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223988158 | C->T | INTERGENIC | None |