Detailed information of SNP:
|
SNP ID:
sf1223990451(Gbrowse)
Chromosome: chr12 Position: 23990451 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.82% | 36.18% |
| All Indica | 799 | 86.36% | 13.64% |
| All Japonica | 493 | 24.34% | 75.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 333 | 30.93% | 69.07% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223990451 | A->G | INTERGENIC | None |