Detailed information of SNP:
SNP ID:
sf1223990451(Gbrowse)
Chromosome: chr12 Position: 23990451 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1415 | 63.82% | 36.18% |
All Indica | 799 | 86.36% | 13.64% |
All Japonica | 493 | 24.34% | 75.66% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 79.47% | 20.53% |
Indica II | 213 | 91.55% | 8.45% |
Indica Intermediate | 211 | 93.36% | 6.64% |
Temperate Japonica | 333 | 30.93% | 69.07% |
Tropical Japonica | 94 | 5.32% | 94.68% |
Japonica Intermediate | 66 | 18.18% | 81.82% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1223990451 | A->G | INTERGENIC | None |