Detailed information of SNP:
|
SNP ID:
sf1223991836(Gbrowse)
Chromosome: chr12 Position: 23991836 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 63.87% | 36.13% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 495 | 24.44% | 75.56% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223991836 | C->T | INTERGENIC | None |