Detailed information of SNP:
|
SNP ID:
sf1223993455(Gbrowse)
Chromosome: chr12 Position: 23993455 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 85.60% | 14.40% |
| All Indica | 798 | 75.44% | 24.56% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 73.07% | 26.93% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223993455 | T->C | INTERGENIC | None |