Detailed information of SNP:
|
SNP ID:
sf1223994091(Gbrowse)
Chromosome: chr12 Position: 23994091 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 64.18% | 35.82% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 489 | 23.93% | 76.07% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 329 | 29.79% | 70.21% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 21.21% | 78.79% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223994091 | T->C | INTERGENIC | None |