Detailed information of SNP:
|
SNP ID:
sf1223994537(Gbrowse)
Chromosome: chr12 Position: 23994537 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 79.84% | 20.16% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 67.81% | 32.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223994537 | A->G | LOC_Os12g39050(LOC_Os12g39050.1) | Synonymous |