Detailed information of SNP:
|
SNP ID:
sf1223996203(Gbrowse)
Chromosome: chr12 Position: 23996203 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.32% | 19.68% |
| All Indica | 798 | 74.94% | 25.06% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 72.46% | 27.54% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223996203 | G->A | INTERGENIC | None |