Detailed information of SNP:
|
SNP ID:
sf1224002333(Gbrowse)
Chromosome: chr12 Position: 24002333 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 80.44% | 19.56% |
| All Indica | 798 | 75.06% | 24.94% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 72.53% | 27.47% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224002333 | A->G | INTERGENIC | None |