Detailed information of SNP:
|
SNP ID:
sf1224024575(Gbrowse)
Chromosome: chr12 Position: 24024575 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 67.56% | 32.44% |
| All Indica | 799 | 83.23% | 16.77% |
| All Japonica | 497 | 50.50% | 49.50% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 34.63% | 65.37% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224024575 | C->T | INTERGENIC | None |