Detailed information of SNP:
|
SNP ID:
sf1224135125(Gbrowse)
Chromosome: chr12 Position: 24135125 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 91.83% | 8.17% |
| All Indica | 769 | 86.74% | 13.26% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 363 | 91.46% | 8.54% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 196 | 75.51% | 24.49% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224135125 | C->G | INTERGENIC | None |