Detailed information of SNP:



SNP ID: sf1224135344(Gbrowse)

Chromosome: chr12

Position: 24135344
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 97.18% 2.82%
All Indica799 100.00% 0.00%
All Japonica497 92.15% 7.85%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 92.24% 7.76%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 86.76% 13.24%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1224135344 T->C INTERGENIC None