Detailed information of SNP:
|
SNP ID:
sf1224177722(Gbrowse)
Chromosome: chr12 Position: 24177722 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 98.22% | 1.78% |
| All Indica | 795 | 97.11% | 2.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 96.55% | 3.45% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224177722 | C->T | INTERGENIC | None |