Detailed information of SNP:
|
SNP ID:
sf1224214345(Gbrowse)
Chromosome: chr12 Position: 24214345 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 75.75% | 24.25% |
| All Indica | 794 | 68.64% | 31.36% |
| All Japonica | 488 | 84.63% | 15.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 64.59% | 35.41% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 89 | 66.29% | 33.71% |
| Japonica Intermediate | 65 | 73.85% | 26.15% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.7) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.1) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.10) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.3) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.2) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.5) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.4) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.6) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.8) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.11) | INTRON |
| sf1224214345 | A->G | LOC_Os12g39420(LOC_Os12g39420.9) | INTRON |