Detailed information of SNP:
|
SNP ID:
sf1224237133(Gbrowse)
Chromosome: chr12 Position: 24237133 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 85.86% | 14.14% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 458 | 60.04% | 39.96% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 310 | 49.03% | 50.97% |
| Tropical Japonica | 86 | 89.53% | 10.47% |
| Japonica Intermediate | 62 | 74.19% | 25.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224237133 | A->C | LOC_Os12g39430(LOC_Os12g39430.1) | INTRON |