Detailed information of SNP:
|
SNP ID:
sf1224281416(Gbrowse)
Chromosome: chr12 Position: 24281416 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 53.43% | 46.57% |
| All Indica | 796 | 34.80% | 65.20% |
| All Japonica | 495 | 89.70% | 10.30% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 39.14% | 60.86% |
| Indica II | 212 | 39.62% | 60.38% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 334 | 86.53% | 13.47% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224281416 | G->A | INTERGENIC | None |