Detailed information of SNP:
|
SNP ID:
sf1224300694(Gbrowse)
Chromosome: chr12 Position: 24300694 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 98.57% | 1.43% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 480 | 96.25% | 3.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 79.07% | 20.93% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224300694 | C->T | INTERGENIC | None |