Detailed information of SNP:
|
SNP ID:
sf1224437073(Gbrowse)
Chromosome: chr12 Position: 24437073 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.76% | 45.24% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224437073 | G->C | INTERGENIC | None |