Detailed information of SNP:
|
SNP ID:
sf1224439571(Gbrowse)
Chromosome: chr12 Position: 24439571 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 94.03% | 5.97% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 489 | 86.91% | 13.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 36.26% | 63.74% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224439571 | C->T | INTERGENIC | None |