Detailed information of SNP:
|
SNP ID:
sf1224455650(Gbrowse)
Chromosome: chr12 Position: 24455650 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 96.87% | 3.13% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 454 | 90.53% | 9.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 99.01% | 0.99% |
| Tropical Japonica | 87 | 80.46% | 19.54% |
| Japonica Intermediate | 63 | 63.49% | 36.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224455650 | G->A | LOC_Os12g39660(LOC_Os12g39660.1) | INTRON |