Detailed information of SNP:
|
SNP ID:
sf1224470743(Gbrowse)
Chromosome: chr12 Position: 24470743 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 85.97% | 14.03% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 482 | 60.37% | 39.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 47.09% | 52.91% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224470743 | C->T | LOC_Os12g39680(LOC_Os12g39680.1) | Non-Synonymous SNP |