Detailed information of SNP:
|
SNP ID:
sf1224472802(Gbrowse)
Chromosome: chr12 Position: 24472802 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 86.05% | 13.95% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 443 | 62.30% | 37.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 306 | 73.20% | 26.80% |
| Tropical Japonica | 82 | 24.39% | 75.61% |
| Japonica Intermediate | 55 | 58.18% | 41.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224472802 | G->A | LOC_Os12g39690(LOC_Os12g39690.1) | Non-Synonymous SNP |