Detailed information of SNP:
|
SNP ID:
sf1224477035(Gbrowse)
Chromosome: chr12 Position: 24477035 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 97.68% | 2.32% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 422 | 92.65% | 7.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 98.94% | 1.06% |
| Tropical Japonica | 81 | 83.95% | 16.05% |
| Japonica Intermediate | 58 | 74.14% | 25.86% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224477035 | G->A | INTERGENIC | None |