Detailed information of SNP:
|
SNP ID:
sf1224482450(Gbrowse)
Chromosome: chr12 Position: 24482450 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 90.18% | 9.82% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 483 | 72.26% | 27.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 63.72% | 36.28% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 63 | 77.78% | 22.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224482450 | G->T | LOC_Os12g39700(LOC_Os12g39700.1) | Non-Synonymous SNP |