Detailed information of SNP:
|
SNP ID:
sf1224490480(Gbrowse)
Chromosome: chr12 Position: 24490480 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.92% | 40.08% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224490480 | A->G | LOC_Os12g39700(LOC_Os12g39700.1) | INTRON |