Detailed information of SNP:
|
SNP ID:
sf1224500333(Gbrowse)
Chromosome: chr12 Position: 24500333 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 95.04% | 4.96% |
| All Indica | 797 | 94.73% | 5.27% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 61 | 59.02% | 40.98% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224500333 | T->A | INTERGENIC | None |