Detailed information of SNP:
|
SNP ID:
sf1224544221(Gbrowse)
Chromosome: chr12 Position: 24544221 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 97.09% | 2.91% |
| All Indica | 757 | 94.98% | 5.02% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 94.43% | 5.57% |
| Indica II | 201 | 94.03% | 5.97% |
| Indica Intermediate | 197 | 96.95% | 3.05% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224544221 | C->T | INTERGENIC | None |