Detailed information of SNP:
|
SNP ID:
sf1224560440(Gbrowse)
Chromosome: chr12 Position: 24560440 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 72.37% | 27.63% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 490 | 24.08% | 75.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 13.29% | 86.71% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224560440 | T->A | INTERGENIC | None |