Detailed information of SNP:
|
SNP ID:
sf1224560921(Gbrowse)
Chromosome: chr12 Position: 24560921 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 68.16% | 31.84% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 490 | 13.47% | 86.53% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 1.51% | 98.49% |
| Tropical Japonica | 91 | 57.14% | 42.86% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224560921 | T->C | INTERGENIC | None |