Detailed information of SNP:
|
SNP ID:
sf1224589504(Gbrowse)
Chromosome: chr12 Position: 24589504 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 69.43% | 30.57% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 494 | 16.19% | 83.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224589504 | A->G | INTERGENIC | None |