Detailed information of SNP:
|
SNP ID:
sf1224640358(Gbrowse)
Chromosome: chr12 Position: 24640358 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 90.28% | 9.72% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 489 | 74.64% | 25.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 81.27% | 18.73% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 65 | 49.23% | 50.77% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224640358 | T->A | INTERGENIC | None |