Detailed information of SNP:
|
SNP ID:
sf1224647007(Gbrowse)
Chromosome: chr12 Position: 24647007 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 82.17% | 17.83% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 488 | 49.59% | 50.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 30.18% | 69.82% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224647007 | A->T | INTERGENIC | None |