Detailed information of SNP:
|
SNP ID:
sf1224684764(Gbrowse)
Chromosome: chr12 Position: 24684764 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 90.47% | 9.53% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 75.60% | 24.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 82.93% | 17.07% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224684764 | G->T | LOC_Os12g39980(LOC_Os12g39980.1) | INTRON |