Detailed information of SNP:
|
SNP ID:
sf1224717968(Gbrowse)
Chromosome: chr12 Position: 24717968 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 77.33% | 22.67% |
| All Indica | 795 | 99.62% | 0.38% |
| All Japonica | 410 | 29.51% | 70.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 287 | 5.92% | 94.08% |
| Tropical Japonica | 78 | 96.15% | 3.85% |
| Japonica Intermediate | 45 | 64.44% | 35.56% |
| Group VI/Aromatic | 6 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224717968 | A->G | LOC_Os12g40030(LOC_Os12g40030.1) | INTRON |