Detailed information of SNP:
|
SNP ID:
sf1224727138(Gbrowse)
Chromosome: chr12 Position: 24727138 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 54.02% | 45.98% |
| All Indica | 789 | 27.50% | 72.50% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 34.97% | 65.03% |
| Indica II | 213 | 15.02% | 84.98% |
| Indica Intermediate | 210 | 27.14% | 72.86% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224727138 | G->A | INTERGENIC | None |