Detailed information of SNP:
|
SNP ID:
sf1224727254(Gbrowse)
Chromosome: chr12 Position: 24727254 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1312 | 50.53% | 49.47% |
| All Indica | 711 | 74.54% | 25.46% |
| All Japonica | 490 | 11.43% | 88.57% |
| Aus | 58 | 94.83% | 5.17% |
| Indica I | 338 | 73.08% | 26.92% |
| Indica II | 180 | 80.56% | 19.44% |
| Indica Intermediate | 193 | 71.50% | 28.50% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 89 | 49.44% | 50.56% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224727254 | T->C | LOC_Os12g40050(LOC_Os12g40050.1) | Non-Synonymous SNP |