Detailed information of SNP:
|
SNP ID:
sf1224735647(Gbrowse)
Chromosome: chr12 Position: 24735647 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.31% | 7.69% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 495 | 83.23% | 16.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224735647 | G->A | LOC_Os12g40060(LOC_Os12g40060.1) | Synonymous |