Detailed information of SNP:
|
SNP ID:
sf1224752116(Gbrowse)
Chromosome: chr12 Position: 24752116 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 98.48% | 1.52% |
| All Indica | 770 | 97.27% | 2.73% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 95.07% | 4.93% |
| Indica II | 202 | 99.50% | 0.50% |
| Indica Intermediate | 203 | 99.01% | 0.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224752116 | G->A | LOC_Os12g40090(LOC_Os12g40090.1) | Non-Synonymous SNP |