Detailed information of SNP:
|
SNP ID:
sf1224873352(Gbrowse)
Chromosome: chr12 Position: 24873352 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 73.47% | 26.53% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 497 | 30.78% | 69.22% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224873352 | T->C | LOC_Os12g40240(LOC_Os12g40240.1) | INTRON |