Detailed information of SNP:
|
SNP ID:
sf1224878990(Gbrowse)
Chromosome: chr12 Position: 24878990 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 74.98% | 25.02% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 30.71% | 69.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 3.60% | 96.40% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224878990 | A->T | INTERGENIC | None |