Detailed information of SNP:
|
SNP ID:
sf1224904812(Gbrowse)
Chromosome: chr12 Position: 24904812 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 87.28% | 12.72% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 486 | 63.58% | 36.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 324 | 48.46% | 51.54% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224904812 | G->A | LOC_Os12g40279(LOC_Os12g40279.2) | Non-Synonymous SNP |
| sf1224904812 | G->A | LOC_Os12g40279(LOC_Os12g40279.1) | Non-Synonymous SNP |