Detailed information of SNP:
|
SNP ID:
sf1224965191(Gbrowse)
Chromosome: chr12 Position: 24965191 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1359 | 94.04% | 5.96% |
| All Indica | 748 | 99.60% | 0.40% |
| All Japonica | 491 | 94.09% | 5.91% |
| Aus | 64 | 29.69% | 70.31% |
| Indica I | 351 | 100.00% | 0.00% |
| Indica II | 205 | 99.02% | 0.98% |
| Indica Intermediate | 192 | 99.48% | 0.52% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 84.44% | 15.56% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224965191 | T->C | LOC_Os12g40370(LOC_Os12g40370.1) | INTRON |