Detailed information of SNP:
|
SNP ID:
sf1224978018(Gbrowse)
Chromosome: chr12 Position: 24978018 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 67.52% | 32.48% |
| All Indica | 787 | 97.97% | 2.03% |
| All Japonica | 484 | 16.94% | 83.06% |
| Aus | 44 | 72.73% | 27.27% |
| Indica I | 369 | 98.92% | 1.08% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 89 | 56.18% | 43.82% |
| Japonica Intermediate | 60 | 41.67% | 58.33% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1224978018 | A->T | INTERGENIC | None |