Detailed information of SNP:
|
SNP ID:
sf1225193748(Gbrowse)
Chromosome: chr12 Position: 25193748 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1354 | 60.56% | 39.44% |
| All Indica | 788 | 94.54% | 5.46% |
| All Japonica | 454 | 9.47% | 90.53% |
| Aus | 60 | 0.00% | 100.00% |
| Indica I | 370 | 97.03% | 2.97% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 328 | 3.05% | 96.95% |
| Tropical Japonica | 74 | 25.68% | 74.32% |
| Japonica Intermediate | 52 | 26.92% | 73.08% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1225193748 | G->A | INTERGENIC | None |